Transcript: lnc-TMPRSS2-83:7

Basic information

LNCipedia transcript ID: lnc-TMPRSS2-83:7 
HGNC Gene Symbol: lnc-TMPRSS2-83    
HGNC Full Gene Name: placenta specific 4
Ensembl Gene ID: ENSG00000280109
Ensembl Transcript ID: ENST00000645185
Location (hg38): chr21:41175231-41185239
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 10009 bp
Exons: 1
Sources: Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000645185.1
Alternative gene names: ENSG00000280109.3; PLAC4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 22.8993 non-coding 
CPAT coding probability 27.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMPRSS2-83:7 no no no no

Available literature

  1. Fiedler (2015), Development of Long Noncoding RNA-Based Strategies to Modulate Tissue Vascularization., J. Am. Coll. Cardiol.
  2. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-POFUT2-83:7
5.1 lnc-POFUT2-83:7
5.2 lnc-TMPRSS2-83:7