Transcript: lnc-TMX3-4:1

Basic information

LNCipedia transcript ID: lnc-TMX3-4:1 
LNCipedia gene ID: lnc-TMX3-4
Ensembl Gene ID: ENSG00000264472
Ensembl Transcript ID: ENST00000584226
Location (hg38): chr18:68899781-68902255
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 559 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT059746; ENST00000584226.4
Alternative gene names: ENSG00000264472.4; RP11-861L17.3; AC096708.3; AC096708.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -98.8118 non-coding 
CPAT coding probability 1.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMX3-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMX3-4:1
4.0 lnc-TMX3-4:1
4.1 lnc-TMX3-4:1
5.0 lnc-TMX3-4:1
5.1 lnc-PQLC1-90:1
5.2 lnc-TMX3-4:1