Transcript: lnc-TNFAIP3-15:3

Basic information

LNCipedia transcript ID: lnc-TNFAIP3-15:3 
LNCipedia gene ID: lnc-TNFAIP3-15
Location (hg38): chr6:137693065-137778057
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2074 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000086133.1|MICT00000312200.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -18.9394 non-coding 
CPAT coding probability 0.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNFAIP3-15:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TNFAIP3-15:3
5.0 lnc-TNFAIP3-15:3
5.1 lnc-TBPL1-70:4
5.2 lnc-TNFAIP3-15:3