Transcript: lnc-TNFAIP3-3:2

Basic information

LNCipedia transcript ID: lnc-TNFAIP3-3:2 
LNCipedia gene ID: lnc-TNFAIP3-3
Location (hg38): chr6:137673430-137687223
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 516 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00011967; NONHSAT115168
Alternative gene names: XLOC_005478; linc-TNFAIP3-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -61.2817 non-coding 
CPAT coding probability 6.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNFAIP3-3:2 no no no no

Available literature

  1. Ding (2015), Genetics of RA susceptibility, what comes next?, RMD Open


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TNFAIP3-3:2
3.1 lnc-TNFAIP3-3:2
4.0 lnc-TNFAIP3-3:2
4.1 lnc-TNFAIP3-3:2
5.0 lnc-TNFAIP3-3:2
5.1 lnc-TBPL1-69:13
5.2 lnc-TNFAIP3-3:2