Transcript: lnc-TNFAIP3-3:9

Basic information

LNCipedia transcript ID: lnc-TNFAIP3-3:9 
LNCipedia gene ID: lnc-TNFAIP3-3
Location (hg38): chr6:137657998-137675305
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1215 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000230533.1|ENCT00000378346.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -55.8811 non-coding 
CPAT coding probability 0.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNFAIP3-3:9 no no no no

Available literature

  1. Ding (2015), Genetics of RA susceptibility, what comes next?, RMD Open


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TNFAIP3-3:9
5.0 lnc-TNFAIP3-3:9
5.1 lnc-TBPL1-69:5
5.2 lnc-TNFAIP3-3:9