Transcript: lnc-TNFAIP6-3:4

Basic information

LNCipedia transcript ID: lnc-TNFAIP6-3:4 
LNCipedia gene ID: lnc-TNFAIP6-3
Location (hg38): chr2:150496271-150497607
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1337 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000045032.1|ENCT00000230773.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -112.0582 non-coding 
CPAT coding probability 0.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNFAIP6-3:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TNFAIP6-3:4
5.0 lnc-TNFAIP6-3:4
5.1 lnc-KCNJ3-32:3
5.2 lnc-TNFAIP6-3:4