Transcript: lnc-TNFRSF10A-1:1

Basic information

LNCipedia transcript ID: lnc-TNFRSF10A-1:1 
LNCipedia gene ID: lnc-TNFRSF10A-1
Ensembl Gene ID: ENSG00000250714
Ensembl Transcript ID: ENST00000511929
Location (hg38): chr8:23225233-23230915
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1125 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000511929.2; RP11-1149O23.4-001; OTTHUMT00000375455.1; NONHSAT125547
Alternative gene names: ENSG00000250714.2; RP11-1149O23.4; OTTHUMG00000163785.1; ENSG00000250714.3; AC100861.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.563 non-coding 
CPAT coding probability 20.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNFRSF10A-1:1 no no no no

Available literature

  1. Zheng (2016), Long non-coding RNA LOC389641 promotes progression of pancreatic ductal adenocarcinoma and increases cell invasion by regulating E-cadherin in a TNFRSF10A-related manner., Cancer Lett.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TNFRSF10A-1:1
4.0 lnc-TNFRSF10A-1:1
4.1 lnc-TNFRSF10A-1:1
5.0 lnc-TNFRSF10A-1:1
5.1 lnc-ENTPD4-3:1
5.2 lnc-TNFRSF10A-1:1