Transcript: lnc-TNFRSF10A-1:2

Basic information

LNCipedia transcript ID: lnc-TNFRSF10A-1:2 
LNCipedia gene ID: lnc-TNFRSF10A-1
Location (hg38): chr8:23225231-23230913
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1125 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00014552
Alternative gene names: XLOC_007026; linc-TNFRSF10A


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.563 non-coding 
CPAT coding probability 20.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNFRSF10A-1:2 no no no no

Available literature

  1. Zheng (2016), Long non-coding RNA LOC389641 promotes progression of pancreatic ductal adenocarcinoma and increases cell invasion by regulating E-cadherin in a TNFRSF10A-related manner., Cancer Lett.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TNFRSF10A-1:1
3.1 lnc-TNFRSF10A-1:2
4.0 lnc-TNFRSF10A-1:2
4.1 lnc-TNFRSF10A-1:2
5.0 lnc-TNFRSF10A-1:2
5.1 lnc-ENTPD4-3:2
5.2 lnc-TNFRSF10A-1:2