Transcript: lnc-TNFRSF13C-1:1

Basic information

LNCipedia transcript ID: lnc-TNFRSF13C-1:1 
LNCipedia gene ID: lnc-TNFRSF13C-1
Location (hg38): chr22:41922023-41923100
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1078 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000566575.1; CTA-250D10.23-001; OTTHUMT00000420304.1; NONHSAT086997
Alternative gene names: ENSG00000260655.1; CTA-250D10.23; OTTHUMG00000172730.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.0836 non-coding 
CPAT coding probability 6.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNFRSF13C-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TNFRSF13C-1:1
4.0 lnc-TNFRSF13C-1:1
4.1 lnc-TNFRSF13C-1:1
5.0 lnc-TNFRSF13C-1:1
5.1 lnc-SHISA8-1:4
5.2 lnc-TNFRSF13C-1:1