Transcript: lnc-TNFRSF14-2:3

Basic information

LNCipedia transcript ID: lnc-TNFRSF14-2:3 
LNCipedia gene ID: lnc-TNFRSF14-2
RefSeq ID: NR_121638
Location (hg38): chr1:2566535-2584534
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 698 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_121638; NR_121638.1
Alternative gene names: LOC100996583


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -5.6577 non-coding 
CPAT coding probability 14.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNFRSF14-2:3 no no no no

Available literature

  1. Wang (2015), Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM213B-1:3
4.0 lnc-TNFRSF14-2:3
4.1 lnc-TNFRSF14-2:3
5.0 lnc-TNFRSF14-2:3
5.1 lnc-VAMP3-63:3
5.2 lnc-TNFRSF14-2:3