Transcript: lnc-TNFRSF17-2:4

Basic information

LNCipedia transcript ID: lnc-TNFRSF17-2:4 
LNCipedia gene ID: lnc-TNFRSF17-2
Location (hg38): chr16:11851648-11855190
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3543 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000263307.1|ENCT00000156135.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 43.9232 non-coding 
CPAT coding probability 4.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TNFRSF17-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TNFRSF17-2:4
5.0 lnc-TNFRSF17-2:4
5.1 lnc-PDXDC1-34:3
5.2 lnc-TNFRSF17-2:4