Transcript: lnc-TNFRSF17-3:2

Basic information

LNCipedia transcript ID: lnc-TNFRSF17-3:2 
LNCipedia gene ID: lnc-TNFRSF17-3
Ensembl Gene ID: ENSG00000260723
Ensembl Transcript ID: ENST00000561528
Location (hg38): chr16:12372823-12373897
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 435 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000561528.1; RP11-165M1.2-001; OTTHUMT00000422630.1; NONHSAT140622
Alternative gene names: ENSG00000260723.1; RP11-165M1.2; OTTHUMG00000173259.1; AC007598.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -92.2635 non-coding 
CPAT coding probability 0.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNFRSF17-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TNFRSF17-3:2
4.0 lnc-TNFRSF17-3:2
4.1 lnc-TNFRSF17-3:2
5.0 lnc-TNFRSF17-3:2
5.1 lnc-PDXDC1-30:2
5.2 lnc-TNFRSF17-3:2