Transcript: lnc-TNFSF4-3:1

Basic information

LNCipedia transcript ID: lnc-TNFSF4-3:1 
LNCipedia gene ID: lnc-TNFSF4-3
RefSeq ID: NR_037845
Location (hg38): chr1:173235060-173477155
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 5619 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000421168; NONHSAT007628; NR_037845; NR_037845.1
Alternative gene names: ENSG00000247291; AL645568.1; LOC100506023


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.0709 non-coding 
CPAT coding probability 0.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNFSF4-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC9A11-1:1
3.1 lnc-SLC9A11-2:1
4.0 lnc-SLC9A11-2:1
4.1 lnc-TNFSF4-3:1
5.0 lnc-TNFSF4-3:1
5.1 lnc-SH2D1B-118:1
5.2 lnc-TNFSF4-3:1