Transcript: lnc-TNFSF4-3:10

Basic information

LNCipedia transcript ID: lnc-TNFSF4-3:10 
LNCipedia gene ID: lnc-TNFSF4-3
Ensembl Gene ID: ENSG00000203739
Ensembl Transcript ID: ENST00000437190
Location (hg38): chr1:173418074-173442097
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1016 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000437190.1; RP11-296O14.3-002; OTTHUMT00000084228.1; NONHSAT007633
Alternative gene names: ENSG00000203739.3; RP11-296O14.3; OTTHUMG00000034807.1; AL645568.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -36.4283 non-coding 
CPAT coding probability 1.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNFSF4-3:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC9A11-1:2
4.0 lnc-SLC9A11-1:2
4.1 lnc-TNFSF4-3:10
5.0 lnc-TNFSF4-3:10
5.1 lnc-SH2D1B-118:10
5.2 lnc-TNFSF4-3:10