Transcript: lnc-TNFSF4-3:9

Basic information

LNCipedia transcript ID: lnc-TNFSF4-3:9 
LNCipedia gene ID: lnc-TNFSF4-3
RefSeq ID: NR_125960
Location (hg38): chr1:173417789-173461362
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1819 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_125960; NR_125960.1
Alternative gene names: LOC101928673


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 9.8951 non-coding 
CPAT coding probability 70.40% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TNFSF4-3:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC9A11-1:4
4.0 lnc-SLC9A11-1:4
4.1 lnc-TNFSF4-3:9
5.0 lnc-TNFSF4-3:9
5.1 lnc-SH2D1B-118:9
5.2 lnc-TNFSF4-3:9