Transcript: lnc-TNK2-3:1

Basic information

LNCipedia transcript ID: lnc-TNK2-3:1 
LNCipedia gene ID: lnc-TNK2-3
Location (hg38): chr3:195913078-195913683
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 606 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000607976.1
Alternative gene names: ENSG00000273009.1; RP11-352G9.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.7143 non-coding 
CPAT coding probability 5.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNK2-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TNK2-3:1
4.0 lnc-TNK2-3:1
4.1 lnc-TNK2-3:1
5.0 lnc-TNK2-3:1
5.1 lnc-MUC4-8:1
5.2 lnc-TNK2-3:1