Transcript: lnc-TNP1-3:2

Basic information

LNCipedia transcript ID: lnc-TNP1-3:2 
LNCipedia gene ID: lnc-TNP1-3
Ensembl Gene ID: ENSG00000237479
Ensembl Transcript ID: ENST00000421907
Location (hg38): chr2:216866332-216867813
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 430 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000421907.1; AC007557.2-001; OTTHUMT00000339433.1; NONHSAT076841
Alternative gene names: ENSG00000237479.1; AC007557.2; OTTHUMG00000155316.1; AC007557.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -152.6751 non-coding 
CPAT coding probability 0.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNP1-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TNP1-3:2
4.0 lnc-TNP1-3:2
4.1 lnc-TNP1-3:2
5.0 lnc-TNP1-3:2
5.1 lnc-MREG-22:2
5.2 lnc-TNP1-3:2