Transcript: lnc-TNS2-1:1

Basic information

LNCipedia transcript ID: lnc-TNS2-1:1 
LNCipedia gene ID: lnc-TNS2-1
Location (hg38): chr12:53012096-53012786
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 397 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000550116.1; RP11-983P16.2-002; OTTHUMT00000406028.1; NONHSAT028390
Alternative gene names: ENSG00000257475.1; RP11-983P16.2; OTTHUMG00000169714.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNS2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TENC1-1:1
4.0 lnc-TENC1-1:1
4.1 lnc-TENC1-1:1
5.0 lnc-TENC1-1:1
5.1 lnc-SP1-15:1
5.2 lnc-TNS2-1:1