Transcript: lnc-TNS3-2:7

Basic information

LNCipedia transcript ID: lnc-TNS3-2:7 
LNCipedia gene ID: lnc-TNS3-2
Ensembl Gene ID: ENSG00000233539
Ensembl Transcript ID: ENST00000487094
Location (hg38): chr7:46673785-46759851
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 844 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT120503; ENST00000487094.1
Alternative gene names: ENSG00000233539.5; AC011294.3; AC011294.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -72.8047 non-coding 
CPAT coding probability 0.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNS3-2:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TNS3-2:2
4.0 lnc-AC011294.3.1-2:2
4.1 lnc-AC011294.3.1-2:2
5.0 lnc-AC011294.3.1-2:2
5.1 lnc-TNS3-2:4
5.2 lnc-TNS3-2:7