Transcript: lnc-TOB1-1:1

Basic information

LNCipedia transcript ID: lnc-TOB1-1:1 
LNCipedia gene ID: lnc-TOB1-1
Location (hg38): chr17:50840057-50841626
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 459 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000572491.1; RP11-506D12.5-001; OTTHUMT00000437359.1; NONHSAT054726
Alternative gene names: ENSG00000261976.1; RP11-506D12.5; OTTHUMG00000177523.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -197.7613 non-coding 
CPAT coding probability 8.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TOB1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TOB1-1:1
4.0 lnc-TOB1-1:1
4.1 lnc-TOB1-1:1
5.0 lnc-TOB1-1:1
5.1 lnc-ANKRD40-1:8
5.2 lnc-TOB1-1:1