Transcript: lnc-TOB1-1:2

Basic information

LNCipedia transcript ID: lnc-TOB1-1:2 
LNCipedia gene ID: lnc-TOB1-1
Ensembl Gene ID: ENSG00000261976
Ensembl Transcript ID: ENST00000572491
Location (hg38): chr17:50840057-50841626
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 457 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT054725; ENST00000572491.2
Alternative gene names: ENSG00000261976.2; RP11-506D12.5; AC091062.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -197.7613 non-coding 
CPAT coding probability 67.46% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TOB1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TOB1-1:2
4.0 lnc-TOB1-1:2
4.1 lnc-TOB1-1:2
5.0 lnc-TOB1-1:2
5.1 lnc-ANKRD40-1:9
5.2 lnc-TOB1-1:2