Transcript: lnc-TOB1-2:1

Basic information

LNCipedia transcript ID: lnc-TOB1-2:1 
LNCipedia gene ID: lnc-TOB1-2
Ensembl Gene ID: ENSG00000262006
Ensembl Transcript ID: ENST00000573301
Location (hg38): chr17:50909637-50910232
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 492 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000573301.1; RP11-700H6.4-001; OTTHUMT00000437362.1; NONHSAT054734
Alternative gene names: ENSG00000262006.1; RP11-700H6.4; OTTHUMG00000177525.1; AC005920.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -85.9151 non-coding 
CPAT coding probability 3.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TOB1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TOB1-2:1
4.0 lnc-TOB1-2:1
4.1 lnc-TOB1-2:1
5.0 lnc-TOB1-2:1
5.1 lnc-ANKRD40-6:1
5.2 lnc-TOB1-2:1