Transcript: lnc-TOGARAM2-1:6

Basic information

LNCipedia transcript ID: lnc-TOGARAM2-1:6 
LNCipedia gene ID: lnc-TOGARAM2-1
Location (hg38): chr2:29063293-29090321
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2489 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000042245.1|MICT00000187134.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -10.7053 non-coding 
CPAT coding probability 6.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TOGARAM2-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CLIP4-1:10
5.0 lnc-CLIP4-1:10
5.1 lnc-FOSL2-18:6
5.2 lnc-TOGARAM2-1:6