Transcript: lnc-TOM1L1-10:1

Basic information

LNCipedia transcript ID: lnc-TOM1L1-10:1 
LNCipedia gene ID: lnc-TOM1L1-10
Ensembl Gene ID: ENSG00000275710
Ensembl Transcript ID: ENST00000616755
Location (hg38): chr17:54964474-54964679
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 206 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000616755.1
Alternative gene names: ENSG00000275710.1; RP11-257O5.4; AC007485.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -234.4899 non-coding 
CPAT coding probability 0.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TOM1L1-10:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-TOM1L1-10:1
4.1 lnc-TOM1L1-10:1
5.0 lnc-TOM1L1-10:1
5.1 lnc-PRR11-62:1
5.2 lnc-TOM1L1-10:1