Transcript: lnc-TOMM20-1:2

Basic information

LNCipedia transcript ID: lnc-TOMM20-1:2 
LNCipedia gene ID: lnc-TOMM20-1
Location (hg38): chr1:234980166-234980758
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 281 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00001888
Alternative gene names: XLOC_001266; linc-IRF2BP2-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -209.7205 non-coding 
CPAT coding probability 0.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TOMM20-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TOMM20-1:1
3.1 lnc-TOMM20-1:2
4.0 lnc-TOMM20-1:2
4.1 lnc-TOMM20-1:2
5.0 lnc-TOMM20-1:2
5.1 lnc-SIPA1L2-42:4
5.2 lnc-TOMM20-1:2