Transcript: lnc-TOMM20-1:5

Basic information

LNCipedia transcript ID: lnc-TOMM20-1:5 
LNCipedia gene ID: lnc-TOMM20-1
Location (hg38): chr1:234973905-234981015
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 6598 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000258082.1|ENCT00000039375.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -67.1188 non-coding 
CPAT coding probability 1.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TOMM20-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TOMM20-1:5
5.0 lnc-TOMM20-1:5
5.1 lnc-SIPA1L2-42:1
5.2 lnc-TOMM20-1:5