Transcript: lnc-TOMM7-1:1

Basic information

LNCipedia transcript ID: lnc-TOMM7-1:1 
LNCipedia gene ID: lnc-TOMM7-1
Ensembl Gene ID: ENSG00000179428
Ensembl Transcript ID: ENST00000325042
RefSeq ID: NR_131935
Location (hg38): chr7:22725395-22727620
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1364 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000325042.2; AC073072.5-001; OTTHUMT00000326712.1; NONHSAT119480; NR_131935.1
Alternative gene names: ENSG00000179428.2; AC073072.5; OTTHUMG00000152547.1; AC073072.1; LOC541472


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -233.864 non-coding 
CPAT coding probability 1.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TOMM7-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TOMM7-1:1
4.0 lnc-TOMM7-1:1
4.1 lnc-TOMM7-1:1
5.0 lnc-TOMM7-1:1
5.1 lnc-SKAP2-62:1
5.2 lnc-TOMM7-1:1