Transcript: lnc-TOPAZ1-1:2

Basic information

LNCipedia transcript ID: lnc-TOPAZ1-1:2 
LNCipedia gene ID: lnc-TOPAZ1-1
Ensembl Gene ID: ENSG00000261786
Ensembl Transcript ID: ENST00000568686
Location (hg38): chr3:44117299-44122365
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5067 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000568686.1; RP4-555D20.2-001; OTTHUMT00000430883.1; NONHSAT089305
Alternative gene names: ENSG00000261786.1; RP4-555D20.2; OTTHUMG00000175704.1; AC006058.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -53.1927 non-coding 
CPAT coding probability 1.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TOPAZ1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C3orf77-1:1
4.0 lnc-C3orf77-1:1
4.1 lnc-C3orf77-1:1
5.0 lnc-C3orf77-1:1
5.1 lnc-KLHL40-37:2
5.2 lnc-TOPAZ1-1:2