Transcript: lnc-TOR1AIP2-1:1

Basic information

LNCipedia transcript ID: lnc-TOR1AIP2-1:1 
LNCipedia gene ID: lnc-TOR1AIP2-1
Ensembl Gene ID: ENSG00000231966
Ensembl Transcript ID: ENST00000442108
Location (hg38): chr1:179829609-179836124
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 353 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000693; ENST00000442108; ENST00000442108.1; RP11-12M5.4-001; OTTHUMT00000085303.1; NONHSAT008215
Alternative gene names: XLOC_001107; linc-NPHS2-2; ENSG00000231966; RP11-12M5.4; ENSG00000231966.1; OTTHUMG00000035264.1; AL359853.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -80.9002 non-coding 
CPAT coding probability 9.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TOR1AIP2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TOR1AIP2-1:1
3.1 lnc-TOR1AIP2-1:1
4.0 lnc-TOR1AIP2-1:1
4.1 lnc-TOR1AIP2-1:1
5.0 lnc-TOR1AIP2-1:1
5.1 lnc-SH2D1B-180:1
5.2 lnc-TOR1AIP2-1:1