Transcript: lnc-TOR1AIP2-2:2

Basic information

LNCipedia transcript ID: lnc-TOR1AIP2-2:2 
LNCipedia gene ID: lnc-TOR1AIP2-2
Ensembl Gene ID: ENSG00000229407
Ensembl Transcript ID: ENST00000453051
Location (hg38): chr1:179816184-179817424
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 401 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000453051.1; RP11-12M5.3-002; OTTHUMT00000085302.1; ENST00000453051.5
Alternative gene names: ENSG00000229407.1; RP11-12M5.3; OTTHUMG00000035263.1; ENSG00000229407.5; AL359853.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -107.5773 non-coding 
CPAT coding probability 8.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TOR1AIP2-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TOR1AIP2-2:2
4.0 lnc-TOR1AIP2-2:2
4.1 lnc-TOR1AIP2-2:2
5.0 lnc-TOR1AIP2-2:2
5.1 lnc-SH2D1B-179:5
5.2 lnc-TOR1AIP2-2:2