Transcript: lnc-TOR1AIP2-3:2

Basic information

LNCipedia transcript ID: lnc-TOR1AIP2-3:2 
LNCipedia gene ID: lnc-TOR1AIP2-3
Location (hg38): chr1:179926290-179926880
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 464 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00002525; NONHSAT008232
Alternative gene names: XLOC_001108; linc-TOR1AIP2-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.2739 non-coding 
CPAT coding probability 1.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TOR1AIP2-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TOR1AIP2-2:1
3.1 lnc-TOR1AIP2-3:2
4.0 lnc-TOR1AIP2-3:2
4.1 lnc-TOR1AIP2-3:2
5.0 lnc-TOR1AIP2-3:2
5.1 lnc-SH2D1B-184:3
5.2 lnc-TOR1AIP2-3:2