Transcript: lnc-TOR1AIP2-3:3

Basic information

LNCipedia transcript ID: lnc-TOR1AIP2-3:3 
LNCipedia gene ID: lnc-TOR1AIP2-3
Ensembl Gene ID: ENSG00000261831
Ensembl Transcript ID: ENST00000567486
Location (hg38): chr1:179926641-179941796
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 447 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT008234; ENST00000567486.2
Alternative gene names: ENSG00000261831.2; RP11-533E19.2; AL353708.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -109.0043 non-coding 
CPAT coding probability 3.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TOR1AIP2-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TOR1AIP2-3:3
4.0 lnc-TOR1AIP2-3:3
4.1 lnc-TOR1AIP2-3:3
5.0 lnc-TOR1AIP2-3:3
5.1 lnc-SH2D1B-184:2
5.2 lnc-TOR1AIP2-3:3