Transcript: lnc-TOX3-1:12

Basic information

LNCipedia transcript ID: lnc-TOX3-1:12 
LNCipedia gene ID: lnc-TOX3-1
Location (hg38): chr16:52048771-52078490
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 311 bp
Exons: 4
Sources: Broad Institute
Alternative transcript names: TCONS_00025003
Alternative gene names: XLOC_011940; linc-SALL1-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -674.5127 non-coding 
CPAT coding probability 1.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TOX3-1:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-152O14.5.1-1:4
3.1 lnc-RP11-152O14.5.1-1:5
4.0 lnc-RP11-152O14.5.1-1:5
4.1 lnc-RP11-152O14.5.1-1:5
5.0 lnc-RP11-152O14.5.1-1:5
5.1 lnc-CFAP20-119:4
5.2 lnc-TOX3-1:12