Transcript: lnc-TP53TG3-168:3

Basic information

LNCipedia transcript ID: lnc-TP53TG3-168:3 
LNCipedia gene ID: lnc-TP53TG3-168
Location (hg38): chr16:33313853-33316542
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2486 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000563960.1; RP11-1437A8.4-001; OTTHUMT00000432116.1; NONHSAT142073
Alternative gene names: ENSG00000260827.1; RP11-1437A8.4; OTTHUMG00000176459.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 43.161 non-coding 
CPAT coding probability 34.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TP53TG3-168:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC136428.1.1-6:2
4.0 lnc-AC136428.1.1-6:2
4.1 lnc-AC136428.1.1-6:2
5.0 lnc-AC136428.1.1-6:2
5.1 lnc-SULT1A2-168:3
5.2 lnc-TP53TG3-168:3