Transcript: lnc-TP53TG3-27:2

Basic information

LNCipedia transcript ID: lnc-TP53TG3-27:2 
LNCipedia gene ID: lnc-TP53TG3-27
Ensembl Gene ID: ENSG00000260827
Ensembl Transcript ID: ENST00000565847
Location (hg38): chr16:33203854-33204734
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 426 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565847.1
Alternative gene names: ENSG00000260827.1; RP11-1437A8.4; AC138869.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 5.2741 non-coding 
CPAT coding probability 0.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TP53TG3-27:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC136428.1.1-6:5
4.1 lnc-AC136428.1.1-6:5
5.0 lnc-AC136428.1.1-6:5
5.1 lnc-SULT1A2-166:2
5.2 lnc-TP53TG3-27:2