Transcript: lnc-TP53TG3-28:1

Basic information

LNCipedia transcript ID: lnc-TP53TG3-28:1 
LNCipedia gene ID: lnc-TP53TG3-28
Location (hg38): chr16:33301641-33305434
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 262 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000569850.1; RP11-1437A8.3-001; OTTHUMT00000432108.1; NONHSAT142069
Alternative gene names: ENSG00000260419.1; RP11-1437A8.3; OTTHUMG00000176457.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.605 non-coding 
CPAT coding probability 0.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TP53TG3-28:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC136428.1.1-7:1
4.0 lnc-AC136428.1.1-7:1
4.1 lnc-AC136428.1.1-7:1
5.0 lnc-AC136428.1.1-7:1
5.1 lnc-SULT1A2-167:1
5.2 lnc-TP53TG3-28:1