Transcript: lnc-TP53TG3-29:1

Basic information

LNCipedia transcript ID: lnc-TP53TG3-29:1 
LNCipedia gene ID: lnc-TP53TG3-29
Ensembl Gene ID: ENSG00000261009
Ensembl Transcript ID: ENST00000570288
Location (hg38): chr16:33370473-33372915
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2239 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000570288.1; RP11-1437A8.5-001; OTTHUMT00000432126.1; NONHSAT142078
Alternative gene names: ENSG00000261009.1; RP11-1437A8.5; OTTHUMG00000176462.1; AC141257.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 38.447 non-coding 
CPAT coding probability 34.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TP53TG3-29:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC136428.1.1-5:1
4.0 lnc-AC136428.1.1-5:1
4.1 lnc-AC136428.1.1-5:1
5.0 lnc-AC136428.1.1-5:1
5.1 lnc-SULT1A2-169:1
5.2 lnc-TP53TG3-29:1