Transcript: lnc-TP53TG3-31:1

Basic information

LNCipedia transcript ID: lnc-TP53TG3-31:1 
LNCipedia gene ID: lnc-TP53TG3-31
Ensembl Gene ID: ENSG00000261200
Ensembl Transcript ID: ENST00000568752
Location (hg38): chr16:33541842-33545812
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3971 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000568752.1; RP11-989E6.10-001; OTTHUMT00000432131.1; NONHSAT142088
Alternative gene names: ENSG00000261200.1; RP11-989E6.10; OTTHUMG00000176465.1; AC136944.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 86.6617 coding 
CPAT coding probability 80.36% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TP53TG3-31:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC136428.1.1-3:1
4.0 lnc-AC136428.1.1-3:1
4.1 lnc-AC136428.1.1-3:1
5.0 lnc-AC136428.1.1-3:1
5.1 lnc-SULT1A2-173:1
5.2 lnc-TP53TG3-31:1