Transcript: lnc-TP53TG3-32:2

Basic information

LNCipedia transcript ID: lnc-TP53TG3-32:2 
LNCipedia gene ID: lnc-TP53TG3-32
Ensembl Gene ID: ENSG00000261466
Ensembl Transcript ID: ENST00000568893
Location (hg38): chr16:33548297-33554408
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 660 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000568893.1; RP11-23E10.2-001; OTTHUMT00000432132.1; NONHSAT142091
Alternative gene names: ENSG00000261466.2; RP11-23E10.2; OTTHUMG00000176466.1; AC136944.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.1589 non-coding 
CPAT coding probability 12.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TP53TG3-32:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC136428.1.1-2:2
4.0 lnc-AC136428.1.1-2:2
4.1 lnc-AC136428.1.1-2:2
5.0 lnc-AC136428.1.1-2:2
5.1 lnc-SULT1A2-174:2
5.2 lnc-TP53TG3-32:2