Transcript: lnc-TP53TG3-36:1

Basic information

LNCipedia transcript ID: lnc-TP53TG3-36:1 
LNCipedia gene ID: lnc-TP53TG3-36
Ensembl Gene ID: ENSG00000260312
Ensembl Transcript ID: ENST00000563019
Location (hg38): chr16:33857935-33858864
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 346 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563019.1; RP11-812E19.7-001; OTTHUMT00000431819.1; NONHSAT142111
Alternative gene names: ENSG00000260312.1; RP11-812E19.7; OTTHUMG00000176361.1; AC140658.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.0388 non-coding 
CPAT coding probability 6.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TP53TG3-36:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC136428.1.1-1:1
4.0 lnc-AC136428.1.1-1:1
4.1 lnc-AC136428.1.1-1:1
5.0 lnc-AC136428.1.1-1:1
5.1 lnc-SULT1A2-187:1
5.2 lnc-TP53TG3-36:1