Transcript: lnc-TP53TG3-54:1

Basic information

LNCipedia transcript ID: lnc-TP53TG3-54:1 
LNCipedia gene ID: lnc-TP53TG3-54
Location (hg38): chr16:35192690-35195661
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2972 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000562945.1; RP11-488I20.9-001; OTTHUMT00000431662.1; NONHSAT142162
Alternative gene names: ENSG00000260073.1; RP11-488I20.9; OTTHUMG00000176237.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 80.4623 coding 
CPAT coding probability 14.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TP53TG3-54:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LINC00273-5:1
4.0 lnc-LINC00273-5:1
4.1 lnc-LINC00273-5:1
5.0 lnc-LINC00273-5:1
5.1 lnc-SULT1A2-219:1
5.2 lnc-TP53TG3-54:1