Transcript: lnc-TP53TG3-66:3

Basic information

LNCipedia transcript ID: lnc-TP53TG3-66:3 
LNCipedia gene ID: lnc-TP53TG3-66
Ensembl Gene ID: ENSG00000260857
Ensembl Transcript ID: ENST00000562591
Location (hg38): chr16:35505093-35506462
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 459 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000562591.1
Alternative gene names: ENSG00000260857.2; RP11-80F22.15; AC018558.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.4151 non-coding 
CPAT coding probability 0.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TP53TG3-66:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LINC00273-27:3
4.0 lnc-LINC00273-27:3
4.1 lnc-LINC00273-27:3
5.0 lnc-LINC00273-27:3
5.1 lnc-SULT1A2-231:3
5.2 lnc-TP53TG3-66:3