Transcript: lnc-TP53TG3D-3:2

Basic information

LNCipedia transcript ID: lnc-TP53TG3D-3:2 
LNCipedia gene ID: lnc-TP53TG3D-3
Ensembl Gene ID: ENSG00000261569
Ensembl Transcript ID: ENST00000565347
Location (hg38): chr16:32650142-32663956
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 540 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565347.1; RP11-586K12.11-001; OTTHUMT00000432352.1; NONHSAT142028
Alternative gene names: ENSG00000261569.1; RP11-586K12.11; OTTHUMG00000176503.1; ENSG00000261569.5; AC138907.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.912 non-coding 
CPAT coding probability 3.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TP53TG3D-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC133485.1.1-3:2
4.0 lnc-AC133485.1.1-3:2
4.1 lnc-AC133485.1.1-3:2
5.0 lnc-AC133485.1.1-3:2
5.1 lnc-ZNF646-84:2
5.2 lnc-TP53TG3D-3:2