Transcript: lnc-TP53TG3F-36:1

Basic information

LNCipedia transcript ID: lnc-TP53TG3F-36:1 
LNCipedia gene ID: lnc-TP53TG3F-36
Ensembl Gene ID: ENSG00000259791
Ensembl Transcript ID: ENST00000566449
Location (hg38): chr16:35640029-35640582
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 554 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000566449.1; RP11-14K3.7-001; OTTHUMT00000431390.1; NONHSAT142220
Alternative gene names: ENSG00000259791.1; RP11-14K3.7; OTTHUMG00000176019.1; AC092325.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -34.5074 non-coding 
CPAT coding probability 0.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TP53TG3F-36:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTD-2144E22.5.1-8:1
4.0 lnc-CTD-2144E22.5.1-8:1
4.1 lnc-CTD-2144E22.5.1-8:1
5.0 lnc-CTD-2144E22.5.1-8:1
5.1 lnc-ZNF646-136:1
5.2 lnc-TP53TG3F-36:1