Transcript: lnc-TP53TG3F-6:1

Basic information

LNCipedia transcript ID: lnc-TP53TG3F-6:1 
LNCipedia gene ID: lnc-TP53TG3F-6
Ensembl Gene ID: ENSG00000261800
Ensembl Transcript ID: ENST00000565523
Location (hg38): chr16:35143722-35144881
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 703 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565523.1; RP11-244B22.11-001; OTTHUMT00000431656.1; NONHSAT142155
Alternative gene names: ENSG00000261800.1; RP11-244B22.11; OTTHUMG00000176231.1; AC023824.6; AC023824.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 86.1796 coding 
CPAT coding probability 26.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TP53TG3F-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTD-2144E22.5.1-2:1
4.0 lnc-CTD-2144E22.5.1-2:1
4.1 lnc-CTD-2144E22.5.1-2:1
5.0 lnc-CTD-2144E22.5.1-2:1
5.1 lnc-ZNF646-118:1
5.2 lnc-TP53TG3F-6:1