Transcript: lnc-TP53TG3F-9:2

Basic information

LNCipedia transcript ID: lnc-TP53TG3F-9:2 
LNCipedia gene ID: lnc-TP53TG3F-9
Ensembl Gene ID: ENSG00000260958
Ensembl Transcript ID: ENST00000569557
Location (hg38): chr16:35207959-35253649
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 849 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000569557.2; RP11-488I20.8-002; OTTHUMT00000431667.2; NONHSAT142166
Alternative gene names: ENSG00000260958.2; RP11-488I20.8; OTTHUMG00000176241.2; AC023824.4; AC023824.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 36.7021 non-coding 
CPAT coding probability 2.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TP53TG3F-9:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTD-2144E22.5.1-5:2
4.0 lnc-CTD-2144E22.5.1-5:2
4.1 lnc-CTD-2144E22.5.1-5:2
5.0 lnc-CTD-2144E22.5.1-5:2
5.1 lnc-ZNF646-125:2
5.2 lnc-TP53TG3F-9:2