Transcript: lnc-TP53TG3F-9:3

Basic information

LNCipedia transcript ID: lnc-TP53TG3F-9:3 
LNCipedia gene ID: lnc-TP53TG3F-9
Location (hg38): chr16:35237300-35253040
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3309 bp
Exons: 3
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT142170; FPKM1_group_11569_transcript_7
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 26.2543 non-coding 
CPAT coding probability 1.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TP53TG3F-9:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTD-2144E22.5.1-5:3
4.0 lnc-CTD-2144E22.5.1-5:3
4.1 lnc-CTD-2144E22.5.1-5:3
5.0 lnc-CTD-2144E22.5.1-5:3
5.1 lnc-ZNF646-125:3
5.2 lnc-TP53TG3F-9:3