Transcript: lnc-TPO-3:1

Basic information

LNCipedia transcript ID: lnc-TPO-3:1 
LNCipedia gene ID: lnc-TPO-3
Location (hg38): chr2:1572554-1580311
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 555 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00002796; NONHSAT068653
Alternative gene names: XLOC_001315; linc-TTC15-7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -50.3609 non-coding 
CPAT coding probability 4.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TPO-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TPO-3:1
3.1 lnc-TPO-3:1
4.0 lnc-TPO-3:1
4.1 lnc-TPO-3:1
5.0 lnc-TPO-3:1
5.1 lnc-SNX17-279:1
5.2 lnc-TPO-3:1