Transcript: lnc-TPRA1-8:2

Basic information

LNCipedia transcript ID: lnc-TPRA1-8:2 
LNCipedia gene ID: lnc-TPRA1-8
Location (hg38): chr3:127622387-127628957
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 288 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000066020.1|MICT00000249967.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -29.6149 non-coding 
CPAT coding probability 3.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TPRA1-8:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TPRA1-8:2
5.0 lnc-TPRA1-8:2
5.1 lnc-MGLL-8:2
5.2 lnc-TPRA1-8:2