Transcript: lnc-TPSB2-1:2

Basic information

LNCipedia transcript ID: lnc-TPSB2-1:2 
LNCipedia gene ID: lnc-TPSB2-1
Location (hg38): chr16:1260952-1262959
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1090 bp
Exons: 7
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000440800.2; RP11-616M22.6-201
Alternative gene names: ENSG00000196364.7; RP11-616M22.6; OTTHUMG00000172997.1; PRSS29P


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 359.3029 coding 
CPAT coding probability 96.29% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TPSB2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-616M22.6.1-1:2
4.0 lnc-RP11-616M22.6.1-1:2
4.1 lnc-RP11-616M22.6.1-1:2
5.0 lnc-RP11-616M22.6.1-1:2
5.1 lnc-PKMYT1-98:2
5.2 lnc-TPSB2-1:2